[Mpi3-ft] Communicator Virtualization as a step forward

Thu Feb 19 05:31:03 CST 2009

Thanks. What would be the best API for this message logging approach? It looks a little bit like journal file system, doesn't it?

-----Original Message-----
From: mpi3-ft-bounces at lists.mpi-forum.org [mailto:mpi3-ft-bounces at lists.mpi-forum.org] On Behalf Of Greg Bronevetsky
Sent: Wednesday, February 18, 2009 8:10 PM
To: MPI 3.0 Fault Tolerance and Dynamic Process Control working Group; MPI 3.0 Fault Tolerance and Dynamic Process Control working Group
Subject: Re: [Mpi3-ft] Communicator Virtualization as a step forward

>First, this API works only for the synch-and-stop protocol. It does
>not support any other protocol and this will lead into bad places in
>the future because this protocol scales poorly with increasing
>failure rates since it requires all processes to participate in every
>single recovery. I can discuss the reasons for my assertion in more
>detail if you'd like.
>
>AS> What other protocols are you talking about? I did not tell
>anywhere whether these calls synch anything, or whether they are
>collective, or whether the checkpointer is called on all nodes. This
>remains to be defined. If you would please define other scenarios,
>including those that scale well, I bet we'd probably be able to map
>them to these calls that way or another.
Ok, lets look as message logging. Each process checkpoints
independently but logs all non-deterministic events and the data of
sent or received messages (details and overheads depend on protocol).
If a process checkpoints, we can erase all the logged non-determinism
or message data that relates to events before this checkpoint. If
some process fails, it rolls back to its last checkpoint and all of
the other processes resend to 1. the data of all messages they sent
to it since that checkpoint and 2. the outcomes of all the
nonderministic events that it experienced since that checkpoint.

I know how to implement this either inside MPI or above MPI with the
aid for the fault notification API. These things already exist, for
example in MPICH-V. I can also imagine an API that lets the
application ask MPI to run this protocol on its behalf. However, this
API will not require quiescence or stable states, or anything like
that. In particular, quiescence is completely incompatible with
message logging. Realistically speaking, this procotol can only be
provided to the application without any direct interaction with the
application. This is fine but it also suggests that we don't need
much of an API to support it. The same applies to other protocols
that need to communicate before, after and/or during the checkpoint.

As for your other points, Thomas' email covers roughly the same
points that I would have made.

Greg Bronevetsky
Post-Doctoral Researcher
1028 Building 451
Lawrence Livermore National Lab
(925) 424-5756
bronevetsky1 at llnl.gov
http://greg.bronevetsky.com

>Second, this API is not compatible with application-level
>checkpointing. An application-level checkpointer can deal with
>internal MPI state in one of two ways. One option is to checkpoint it
>at a high-level by using only the existing MPI calls, performing the
>appropriate tracking of messages at calls to MPI_Send and MPI_Recv.
>The simplest example of this is to ensure that there is no
>communication going on at the time of the checkpoint, and then save
>each process' state immediately after calling MPI_Barrier(). If this
>is the option used, there is no need for any API extensions.
>
>AS> One option for the application level checkpointing is to save
>the apps specific state (those two vectors) without saving the state
>of the MPI at all. This will work if the MPI state is quiet (no
>connections, nothing), and the application can be sure that its
>state will be good, and when it restarts, the MPI hitting the
>MPI_restore_after_checkpoint will know how to re-establish all
>connections, etc. I think this is more than an MPI_Barrier, isn't it?
>
>The second option is for the application to somehow same MPI internal
>data structures, which is what the MPI_Prepare_for_checkpoint call is
>for: to make sure that all MPI state is in locations accessible by
>the application. Where is that? Well, it depends on the operating
>system and the hardware. Does the application need to checkpoint and
>restore MPI's open file handles or shared memory regions or is MPI
>supposed to let those go during MPI_Prepare_for_checkpoint? The point
>is, all these details cannot be defined in the MPI spec and if this
>is the case, the call will not be sufficiently well-defined to be
>used by an application-level checkpointer. However, it can be used by
>the application to initiate a system-level checkpoint since in this
>case all those details will not be the application's problem.
>
>AS> As for the place where all relevant MPI data is to be stored at
>this point in time, we should not care - the MPI implementation and
>the checkpointer involved will agree on this when the MPI will be
>configured to use this particular checkpointer, either statically or
>dynamically. The checkpointer will know that the data is in the
>"right" place when it gats control after the MPI_prepare_for_checkpoint call.
>
>Finally, it does support system-initiated checkpointing. If the
>system wants to start a checkpoint in the middle of an MPI_Send()
>call, this API provides no help. If we care about this use-case we
>need to allow checkpoints to be taken at all times or provide a way
>to register a callback that tells the system when a checkpoint can
>next be taken.
>
>AS> I suppose this is "does not support", right? If so, let's simply
>add this callback registration call, say,
>MPI_REGISTER_CHECKPOINT_CALLBACK, that will define the call to be
>made when the MPI_Prepare_for_checkpoint is about to return control
>to the application. This will I guess address your concern, won't it?
>
>The bottom line given the above issues is that the only benefit this
>API does have is providing a common set of names for functions that
>have poor semantics and limited functionality. This benefit does not
>pass the bar.
>
>AS> See above. I think you raise valid points, but all of them can
>be adequately addressed given the desire to provide the
>checkpoint-restart capability
>
>If I'm allowed to digress here and refer back to the fault
>notification, note that the checkpoint/restart capability is
>something that does guarantee fault tolerance, also in the case when
>fatal unrecoverable errors occur. You "simply" fix the machine and
>restart from the earlier checkpoint.
>
>As such, this widely used and proven capability may be a safe first
>bet for the FT WG to introduce as something people will like and
>will use. Much more likely, in fact, than the notification stuff
>that yet needs to be properly defined, and as currently envisioned,
>with all that uncertain communicator restoration stuff, will require
>substantial application rethinking and repgrogramming to be used.
>
>After all, this is only a matter of priorities. Going for a low
>hanging fruit like checkpoint/restart may be unromantic, but it's
>definitely very pragmatic and sound. And in any case, I call upon
>the same set of criteria to be used for all things that we consider.
>Usability in the sense that a feature will be used by commercial
>apps is definitely one of them. Or so I think.
>
>Greg Bronevetsky
>Post-Doctoral Researcher
>1028 Building 451
>Lawrence Livermore National Lab
>(925) 424-5756
>bronevetsky1 at llnl.gov
>http:// greg.bronevetsky.com
>
>At 09:27 AM 2/18/2009, Supalov, Alexander wrote:
> >I see. Let me explain what I think those two calls would do to
> >facilitate checkpointing.
> >
> >The program piece would look as follows:
> >
> >CALL MPI_PREPARE_FOR_CHECKPOINT
> >
> >! Whatever calls are necessary to do the actual checkpointing,
> >including, in the case of resident monitoring checkpointer, none.
> >
> >CALL MPI_RESTORE_AFTER_CHECKPOINT
> >
> >The first call will bring MPI into a state that is acceptable to the
> >checkpointer involved. This may include quiescence, etc.
> >
> >Then the checkpointer will do its job. Note that this may be
> >application level checkpointer that saves two important arrays. Or
> >this may be a system checkpointer that dumps the memory, etc.
> >Finally, this can be a checkpointer that is notified when the
> >MPI_PREPARE_FOR_CHECKPOINT is about to leave and does the job in
> >some way without the program calling it.
> >
> >The second call will restore the MPI state to what it was,
> >functionally, after the checkpoint. "Functionally" here means that
> >this may include running on a different set of nodes, etc.
> >
> >Is it this scenario that you think does not pass the bar? If so,
> in what way?
> >
> >-----Original Message-----
> >From: mpi3-ft-bounces at lists.mpi-forum.org
> >[mailto:mpi3-ft-bounces at lists.mpi-forum.org] On Behalf Of Greg Bronevetsky
> >Sent: Wednesday, February 18, 2009 6:20 PM
> >To: MPI 3.0 Fault Tolerance and Dynamic Process Control working
> >Group; MPI 3.0 Fault Tolerance and Dynamic Process Control working Group
> >Subject: Re: [Mpi3-ft] Communicator Virtualization as a step forward
> >
> >My point is that each MPI implementation will have to negotiate with
> >each checkpointer what this call will mean on each platform, meaning
> >that it is upto the implementation-specific call to do all that
> >magic. It doesn't save the application any real effort to call this
> >routine by its implementation-specific name rather than a unified
> >name given that the other two major problems are not solved:
> >- Providing a uniform way for checkpointers and MPI implementations
> >to interact (THE major for having this proposal in the first place) and
> >- Support for more than the synch-and-stop checkpointing protocol,
> >which does scales poorly with rising failure rates.
> >
> >My point here is that covering one of the three major issues is not
> >good enough to modify the MPI specification and I don't think that
> >we'll ever be able to do more than that. We're pretty much agreed in
> >the working group that the first point above cannot be done and I
> >don't think that the second can be done without providing callbacks
> >to be called for each incoming/outgoing message.
> >
> >Greg Bronevetsky
> >Post-Doctoral Researcher
> >1028 Building 451
> >Lawrence Livermore National Lab
> >(925) 424-5756
> >bronevetsky1 at llnl.gov
> >http://  greg.bronevetsky.com
> >
> >At 08:40 AM 2/18/2009, Supalov, Alexander wrote:
> > >Thanks. How will the checkpointer-specific call talk to the MPI?
> > >
> > >-----Original Message-----
> > >From: mpi3-ft-bounces at lists.mpi-forum.org
> > >[mailto:mpi3-ft-bounces at lists.mpi-forum.org] On Behalf Of Greg Bronevetsky
> > >Sent: Wednesday, February 18, 2009 5:29 PM
> > >To: MPI 3.0 Fault Tolerance and Dynamic Process Control working
> > >Group; MPI 3.0 Fault Tolerance and Dynamic Process Control working Group
> > >Subject: Re: [Mpi3-ft] Communicator Virtualization as a step forward
> > >
> > >
> > > >Thanks. How will you let the MPI know the checkpoint is coming, to
> > > >give it a fair chance to prepare to this and then recover after the
> > > >checkpoint? This is akin to the MPI_Finalize/MPI_Init in some sense,
> > > >midway thru the job, hence the analogy.
> > >
> > >Just use the checkpointer-specific call. The call is going to have
> > >checkpointer-specific semantics, so why not give it a
> > >checkpointer-specific name? I understand that there is some use to
> > >allowing applications to use the same name across all checkpointers
> > >but the bar should be higher than that for adding something to the
> > >standard. Also, right now the whole approach inherently only supports
> > >one checkpointing protocol: synch-and-stop. If we can work out a more
> > >generic API that supports other protocols I think that it may have
> > >enough value to be included in the spec. Right now it still hasn't
> > >passed the bar.
> > >
> > >Greg Bronevetsky
> > >Post-Doctoral Researcher
> > >1028 Building 451
> > >Lawrence Livermore National Lab
> > >(925) 424-5756
> > >bronevetsky1 at llnl.gov
> > >http://   greg.bronevetsky.com
> > >
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